Master 4.0 (#2210)
* stage academic conversation * stage document conversation * fix buggy gradio version * file dynamic load * merge more academic plugins * accelerate nltk * feat: 为predict函数添加文件和URL读取功能 - 添加URL检测和网页内容提取功能，支持自动提取网页文本 - 添加文件路径识别和文件内容读取功能，支持private_upload路径格式 - 集成WebTextExtractor处理网页内容提取 - 集成TextContentLoader处理本地文件读取 - 支持文件路径与问题组合的智能处理 * back * block unstable --------- Co-authored-by: XiaoBoAI <liuboyin2019@ia.ac.cn>
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binary-husky
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crazy_functions/review_fns/handlers/review_handler.py
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crazy_functions/review_fns/handlers/review_handler.py
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from typing import List, Dict, Any, Tuple
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from .base_handler import BaseHandler
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from crazy_functions.review_fns.query_analyzer import SearchCriteria
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import asyncio
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class 文献综述功能(BaseHandler):
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"""文献综述处理器"""
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def __init__(self, arxiv, semantic, llm_kwargs=None):
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super().__init__(arxiv, semantic, llm_kwargs)
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async def handle(
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self,
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criteria: SearchCriteria,
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chatbot: List[List[str]],
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history: List[List[str]],
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system_prompt: str,
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llm_kwargs: Dict[str, Any],
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plugin_kwargs: Dict[str, Any],
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) -> str:
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"""处理文献综述请求，返回最终的prompt"""
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# 获取搜索参数
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search_params = self._get_search_params(plugin_kwargs)
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# 使用_search_all_sources替代原来的并行搜索
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all_papers = await self._search_all_sources(criteria, search_params)
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if not all_papers:
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return self._generate_apology_prompt(criteria)
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self.ranked_papers = self.paper_ranker.rank_papers(
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query=criteria.original_query,
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papers=all_papers,
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search_criteria=criteria
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)
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# 检查排序后的论文数量
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if not self.ranked_papers:
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return self._generate_apology_prompt(criteria)
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# 检查是否包含PubMed论文
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has_pubmed_papers = any(paper.url and 'pubmed.ncbi.nlm.nih.gov' in paper.url
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for paper in self.ranked_papers)
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if has_pubmed_papers:
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return self._generate_medical_review_prompt(criteria)
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else:
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return self._generate_general_review_prompt(criteria)
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def _generate_medical_review_prompt(self, criteria: SearchCriteria) -> str:
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"""生成医学文献综述prompt"""
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return f"""Current time: {self._get_current_time()}
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Conduct a systematic medical literature review on {criteria.main_topic} based STRICTLY on the provided articles.
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Available literature for review:
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{self._format_papers(self.ranked_papers)}
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IMPORTANT: If the user query contains specific requirements for the review structure or format, those requirements take precedence over the following guidelines.
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Please structure your medical review following these guidelines:
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1. Research Overview
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- Main research questions and objectives from the studies
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- Types of studies included (clinical trials, observational studies, etc.)
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- Study populations and settings
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- Time period of the research
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2. Key Findings
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- Main outcomes and results reported in abstracts
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- Primary endpoints and their measurements
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- Statistical significance when reported
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- Observed trends across studies
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3. Methods Summary
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- Study designs used
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- Major interventions or treatments studied
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- Key outcome measures
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- Patient populations studied
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4. Clinical Relevance
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- Reported clinical implications
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- Main conclusions from authors
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- Reported benefits and risks
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- Treatment responses when available
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5. Research Status
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- Current research focus areas
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- Reported limitations
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- Gaps identified in abstracts
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- Authors' suggested future directions
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CRITICAL REQUIREMENTS:
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Citation Rules (MANDATORY):
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- EVERY finding or statement MUST be supported by citations [N], where N is the number matching the paper in the provided literature list
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- When reporting outcomes, ALWAYS cite the source studies using the exact paper numbers from the literature list
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- For findings supported by multiple studies, use consecutive numbers as shown in the literature list [1,2,3]
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- Use ONLY the papers provided in the available literature list above
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- Citations must appear immediately after each statement
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- Citation numbers MUST match the numbers assigned to papers in the literature list above (e.g., if a finding comes from the first paper in the list, cite it as [1])
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- DO NOT change or reorder the citation numbers - they must exactly match the paper numbers in the literature list
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Content Guidelines:
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- Present only information available in the provided papers
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- If certain information is not available, simply omit that aspect rather than explicitly stating its absence
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- Focus on synthesizing and presenting available findings
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- Maintain professional medical writing style
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- Present limitations and gaps as research opportunities rather than missing information
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Writing Style:
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- Use precise medical terminology
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- Maintain objective reporting
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- Use consistent terminology throughout
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- Present a cohesive narrative without referencing data limitations
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Language requirement:
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- If the query explicitly specifies a language, use that language
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- Otherwise, match the language of the original user query
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"""
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def _generate_general_review_prompt(self, criteria: SearchCriteria) -> str:
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"""生成通用文献综述prompt"""
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current_time = self._get_current_time()
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final_prompt = f"""Current time: {current_time}
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Conduct a comprehensive literature review on {criteria.main_topic} focusing on the following aspects:
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{', '.join(criteria.sub_topics)}
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Available literature for review:
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{self._format_papers(self.ranked_papers)}
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IMPORTANT: If the user query contains specific requirements for the review structure or format, those requirements take precedence over the following guidelines.
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Please structure your review following these guidelines:
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1. Introduction and Research Background
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- Current state and significance of the research field
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- Key research problems and challenges
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- Research development timeline and evolution
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2. Research Directions and Classifications
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- Major research directions and their relationships
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- Different technical approaches and their characteristics
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- Comparative analysis of various solutions
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3. Core Technologies and Methods
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- Key technological breakthroughs
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- Advantages and limitations of different methods
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- Technical challenges and solutions
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4. Applications and Impact
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- Real-world applications and use cases
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- Industry influence and practical value
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- Implementation challenges and solutions
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5. Future Trends and Prospects
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- Emerging research directions
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- Unsolved problems and challenges
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- Potential breakthrough points
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CRITICAL REQUIREMENTS:
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Citation Rules (MANDATORY):
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- EVERY finding or statement MUST be supported by citations [N], where N is the number matching the paper in the provided literature list
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- When reporting outcomes, ALWAYS cite the source studies using the exact paper numbers from the literature list
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- For findings supported by multiple studies, use consecutive numbers as shown in the literature list [1,2,3]
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- Use ONLY the papers provided in the available literature list above
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- Citations must appear immediately after each statement
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- Citation numbers MUST match the numbers assigned to papers in the literature list above (e.g., if a finding comes from the first paper in the list, cite it as [1])
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- DO NOT change or reorder the citation numbers - they must exactly match the paper numbers in the literature list
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Writing Style:
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- Maintain academic and professional tone
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- Focus on objective analysis with proper citations
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- Ensure logical flow and clear structure
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Content Requirements:
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- Base ALL analysis STRICTLY on the provided papers with explicit citations
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- When introducing any concept, method, or finding, immediately follow with [N]
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- For each research direction or approach, cite the specific papers [N] that proposed or developed it
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- When discussing limitations or challenges, cite the papers [N] that identified them
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- DO NOT include information from sources outside the provided paper list
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- DO NOT make unsupported claims or statements
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Language requirement:
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- If the query explicitly specifies a language, use that language
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- Otherwise, match the language of the original user query
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"""
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return final_prompt
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